JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP6V0A4_chr7_138701294_138803196	0/0	g0343	1	0	1	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0344	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0345	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0346	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0347	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0348	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0349	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0350	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0351	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0352	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0353	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0354	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0355	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0356	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0357	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0358	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0359	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0360	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0361	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0362	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0363	1	0	1	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0364	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0365	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0366	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0367	1	0	0	1	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0368	1	0	0	1	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0369	1	0	0	1	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0370	1	0	0	0	0	1	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0371	1	0	0	0	0	1	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0372	1	0	1	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0373	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0374	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0375	1	0	1	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	g0376	1	1	0	0	0	0	ATP6V0A4	chr7	138701294	138803196
ATP6V0B_chr1_43969960_43983295	0/1	g0001	128	5	34	67	7	14	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0002	89	38	15	25	0	11	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	1/0	g0003	84	21	5	47	4	6	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0004	43	2	3	36	0	2	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0005	12	11	1	0	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0006	5	5	0	0	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0007	4	0	4	0	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0008	3	0	0	3	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0009	3	3	0	0	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0010	2	2	0	0	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0011	2	0	0	2	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0012	2	2	0	0	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0013	2	0	0	2	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0014	2	0	0	2	0	0	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0015	2	0	0	1	0	1	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	g0016	2	0	2	0	0	0	ATP6V0B	chr1	43969960	43983295