JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP6V1A_chr3_113742035_113817056	0/0	g0265	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0266	1	0	0	1	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0267	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0268	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0269	1	0	0	1	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0270	1	0	0	0	1	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/1	g0271	1	0	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0272	1	1	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0273	1	0	0	0	0	1	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0274	1	0	0	1	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0275	1	0	0	1	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0276	1	0	0	1	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0277	1	1	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0278	1	1	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0279	1	1	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0280	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0281	1	1	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0282	1	1	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0283	1	1	0	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0284	1	0	0	1	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0285	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0286	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0287	1	0	0	0	0	1	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0288	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1A_chr3_113742035_113817056	0/0	g0289	1	0	1	0	0	0	ATP6V1A	chr3	113742035	113817056
ATP6V1B1_chr2_70930900_70970431	0/0	g0001	3	0	3	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0002	3	0	3	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0003	3	0	3	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0004	3	0	0	3	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0005	3	0	2	0	0	1	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0006	2	0	2	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0007	2	0	0	2	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0008	2	0	0	1	0	1	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0009	2	0	2	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0010	2	0	2	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0011	2	0	1	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0012	2	0	0	2	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0013	2	2	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0014	2	0	0	2	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0015	2	0	2	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0016	2	0	0	2	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0017	2	2	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0018	2	0	0	2	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0019	2	0	0	2	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0020	2	0	0	0	0	2	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0021	2	0	1	0	0	1	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0022	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0023	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0024	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0025	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431