JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP6V1B1_chr2_70930900_70970431	0/0	g0376	1	0	0	0	0	1	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0377	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0378	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0379	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0380	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0381	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0382	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0383	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0384	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0385	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0386	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0387	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0388	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0389	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0390	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0391	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0392	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0393	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0394	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0395	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0396	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0397	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0398	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0399	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0400	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0401	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0402	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0403	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0404	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0405	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0406	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0407	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0408	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0409	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0410	1	1	0	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0411	1	0	0	1	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0412	1	0	1	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0413	1	0	1	0	0	0	ATP6V1B1	chr2	70930900	70970431
ATP6V1B1_chr2_70930900_70970431	0/0	g0414	1	0	0	0	0	1	ATP6V1B1	chr2	70930900	70970431
ATP6V1B2_chr8_20192381_20226696	0/0	g0001	31	2	8	17	1	3	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0002	18	5	3	8	1	1	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0003	17	0	2	15	0	0	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0004	16	0	0	16	0	0	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0005	16	0	0	14	1	1	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0006	13	0	4	8	1	0	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0007	13	0	5	1	1	6	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0008	6	0	0	0	0	6	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0009	5	1	3	0	0	1	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0010	5	5	0	0	0	0	ATP6V1B2	chr8	20192381	20226696
ATP6V1B2_chr8_20192381_20226696	0/0	g0011	5	0	0	5	0	0	ATP6V1B2	chr8	20192381	20226696