JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP6V1E2_chr2_46506847_46547577	0/0	g0292	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0293	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0294	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0295	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0296	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0297	1	0	1	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0298	1	0	0	1	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0299	1	0	0	1	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0300	1	0	0	1	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0301	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0302	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0303	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0304	1	0	1	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0305	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0306	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1E2_chr2_46506847_46547577	0/0	g0307	1	1	0	0	0	0	ATP6V1E2	chr2	46506847	46547577
ATP6V1FNB_chr7_128861330_128877047	1/1	g0001	186	22	40	84	13	25	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0002	73	4	17	46	0	6	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0003	31	2	1	27	0	1	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0004	25	24	1	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0005	21	7	2	7	0	5	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0006	19	15	2	2	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0007	14	3	1	10	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0008	13	0	0	13	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0009	12	0	0	9	0	3	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0010	9	2	2	0	2	3	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0011	6	6	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0012	5	0	3	0	0	2	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0013	4	0	1	0	0	3	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0014	2	0	0	2	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0015	2	0	0	2	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0016	2	2	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0017	2	0	0	0	1	1	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0018	2	2	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0019	1	0	0	0	0	1	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0020	1	1	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0021	1	0	0	1	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0022	1	1	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0023	1	0	0	1	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0024	1	0	1	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0025	1	1	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0026	1	0	1	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0027	1	1	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0028	1	0	0	1	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0029	1	0	1	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0030	1	0	0	1	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0031	1	1	0	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	g0032	1	0	1	0	0	0	ATP6V1FNB	chr7	128861330	128877047
ATP6V1F_chr7_128857856_128870847	1/1	g0001	151	9	27	88	9	16	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	g0002	73	8	15	43	1	6	ATP6V1F	chr7	128857856	128870847