JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP6V1G2_chr6_31539444_31551608	0/0	g0005	40	3	2	31	0	4	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0006	39	14	9	10	3	3	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0007	26	10	6	6	2	2	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0008	8	2	1	0	0	5	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0009	8	1	2	1	3	1	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0010	6	3	0	2	1	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0011	4	0	0	0	0	4	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0012	2	0	2	0	0	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0013	2	2	0	0	0	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0014	2	0	0	0	0	2	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0015	2	0	2	0	0	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0016	1	1	0	0	0	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0017	1	0	0	1	0	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0018	1	0	1	0	0	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0019	1	0	0	0	0	1	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	g0020	1	1	0	0	0	0	ATP6V1G2	chr6	31539444	31551608
ATP6V1G3_chr1_198518222_198545680	0/0	g0001	66	14	14	32	3	3	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0002	30	0	0	23	0	7	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0003	28	1	0	24	0	3	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0004	22	1	11	7	0	3	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0005	12	0	4	6	0	2	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0006	10	1	2	0	3	4	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0007	8	0	0	8	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0008	8	0	2	5	0	1	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0009	7	1	5	0	0	1	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0010	7	0	0	7	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0011	7	5	0	2	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0012	6	5	1	0	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/1	g0013	5	0	0	0	1	3	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0014	5	0	3	2	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0015	5	0	3	0	1	1	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0016	5	0	1	4	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0017	4	4	0	0	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0018	3	3	0	0	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0019	3	3	0	0	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0020	3	3	0	0	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0021	3	0	0	3	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0022	3	0	0	3	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0023	3	3	0	0	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0024	3	0	0	3	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0025	3	0	0	3	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0026	3	3	0	0	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0027	3	0	0	3	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0028	3	0	0	3	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0029	3	0	0	3	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0030	3	0	0	2	0	1	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0031	2	0	0	2	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0032	2	0	0	2	0	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0033	2	0	1	0	1	0	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	g0034	2	0	2	0	0	0	ATP6V1G3	chr1	198518222	198545680