JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP9B_chr18_79064394_79383283	0/0	g0277	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0278	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0279	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0280	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0281	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0282	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0283	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0284	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0285	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0286	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0287	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0288	1	0	1	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0289	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0290	1	0	1	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0291	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0292	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0293	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0294	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0295	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0296	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	g0297	1	1	0	0	0	0	ATP9B	chr18	79064394	79383283
ATPAF1_chr1_46627737_46673364	0/0	g0001	22	2	1	18	0	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0002	18	1	7	7	0	3	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0003	16	1	9	3	2	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0004	14	0	4	8	0	2	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0005	9	0	0	9	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0006	8	0	2	5	0	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0007	6	0	1	4	0	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0008	6	0	0	6	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0009	6	6	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0010	5	0	1	1	0	3	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0011	5	0	0	5	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0012	5	0	1	3	0	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0013	4	4	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0014	4	0	0	4	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0015	4	0	0	4	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0016	4	4	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0017	4	0	0	4	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0018	3	0	0	3	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0019	3	0	0	3	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0020	3	2	1	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0021	3	3	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0022	3	0	1	2	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0023	2	0	0	2	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0024	2	0	0	2	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0025	2	2	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0026	2	0	1	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0027	2	0	0	2	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0028	2	0	2	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0029	2	2	0	0	0	0	ATPAF1	chr1	46627737	46673364