JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATPAF1_chr1_46627737_46673364	0/0	g0230	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0231	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0232	1	0	0	0	0	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0233	1	0	0	0	0	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0234	1	0	0	0	0	1	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0235	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0236	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0237	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0238	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0239	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0240	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0241	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0242	1	0	0	1	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0243	1	1	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0244	1	0	1	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0245	1	1	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0246	1	1	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0247	1	1	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	g0248	1	1	0	0	0	0	ATPAF1	chr1	46627737	46673364
ATPAF2_chr17_18013021_18044168	0/0	g0001	8	0	3	4	0	1	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0002	6	0	0	6	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0003	5	0	1	1	1	2	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0004	5	0	3	1	0	1	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0005	5	1	1	2	1	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0006	4	0	1	2	1	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0007	4	3	1	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0008	4	0	3	0	0	1	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0009	3	2	1	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0010	3	3	0	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0011	3	3	0	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0012	2	0	1	0	1	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0013	2	1	1	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0014	2	0	1	0	1	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0015	2	0	0	2	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0016	2	0	0	2	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0017	2	0	0	2	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0018	2	0	0	2	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0019	2	0	0	2	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0020	2	0	0	2	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0021	2	0	0	2	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0022	2	2	0	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0023	2	0	1	1	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0024	2	2	0	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0025	2	0	1	0	0	1	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0026	2	0	2	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	1/0	g0027	2	0	1	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0028	2	0	2	0	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0029	1	0	0	1	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0030	1	0	0	1	0	0	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	g0031	1	0	0	1	0	0	ATPAF2	chr17	18013021	18044168