JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATRAID_chr2_27207041_27222157	0/0	g0027	1	0	0	1	0	0	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	g0028	1	1	0	0	0	0	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	g0029	1	0	1	0	0	0	ATRAID	chr2	27207041	27222157
ATRIP_chr3_48441737_48472645	0/1	g0001	55	6	12	16	4	16	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0002	37	3	7	20	3	4	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0003	35	0	6	29	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0004	11	0	1	10	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0005	10	7	3	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0006	9	2	1	3	0	3	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0007	9	0	1	8	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0008	7	7	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0009	5	5	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0010	4	0	0	4	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0011	4	0	1	3	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0012	3	3	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0013	3	0	0	3	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0014	3	0	0	3	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0015	3	0	0	3	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0016	3	0	1	2	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0017	3	2	1	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0018	3	3	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0019	3	0	0	3	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0020	3	0	0	0	3	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0021	3	2	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	1/0	g0022	2	0	1	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0023	2	0	2	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0024	2	2	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0025	2	2	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0026	2	0	1	0	0	1	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0027	2	1	1	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0028	2	0	0	2	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0029	2	0	1	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0030	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0031	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0032	1	0	0	0	0	1	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0033	1	1	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0034	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0035	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0036	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0037	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0038	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0039	1	0	1	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0040	1	1	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0041	1	1	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0042	1	0	1	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0043	1	1	0	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0044	1	0	1	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0045	1	0	1	0	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0046	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	g0047	1	0	0	1	0	0	ATRIP	chr3	48441737	48472645