JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATXN10_chr22_45666834_45850307	0/0	g0305	1	0	1	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0306	1	0	0	0	0	1	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0307	1	0	0	1	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0308	1	1	0	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0309	1	0	1	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0310	1	0	0	0	1	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0311	1	0	1	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0312	1	0	1	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0313	1	0	1	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0314	1	1	0	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0315	1	0	1	0	0	0	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	g0316	1	1	0	0	0	0	ATXN10	chr22	45666834	45850307
ATXN1L_chr16_71840976_71862328	0/0	g0001	144	16	29	83	5	11	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0002	69	3	4	45	1	16	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0003	27	3	7	14	0	3	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0004	19	0	12	4	0	3	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0005	18	2	6	6	0	4	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0006	18	17	1	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	1/0	g0007	13	3	6	2	1	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0008	12	11	1	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0009	12	1	5	1	1	4	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0010	11	0	0	10	0	1	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0011	9	0	3	4	0	2	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0012	8	8	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0013	8	0	0	8	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0014	3	0	2	0	1	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0015	3	0	0	3	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0016	3	1	1	1	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0017	3	0	3	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0018	3	2	0	0	1	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0019	3	0	1	0	1	1	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0020	3	3	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0021	2	0	0	2	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0022	2	2	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0023	2	2	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0024	2	2	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0025	2	2	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0026	1	0	0	0	0	1	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0027	1	0	0	1	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0028	1	1	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0029	1	0	0	1	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0030	1	0	1	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0031	1	1	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0032	1	1	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0033	1	0	1	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0034	1	1	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0035	1	0	0	1	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0036	1	0	0	1	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0037	1	1	0	0	0	0	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	g0038	1	1	0	0	0	0	ATXN1L	chr16	71840976	71862328