JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATXN1_chr6_16294112_16766460	0/0	g0145	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0146	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0147	1	0	0	0	0	1	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0148	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0149	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0150	1	0	0	0	0	1	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0151	1	0	0	0	0	1	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0152	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0153	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0154	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0155	1	0	1	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0156	1	0	0	0	0	1	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0157	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0158	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0159	1	0	1	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0160	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0161	1	0	0	0	0	1	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0162	1	0	0	0	0	1	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0163	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0164	1	0	1	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0165	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0166	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0167	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0168	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0169	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0170	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0171	1	0	0	0	0	1	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0172	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0173	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0174	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0175	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0176	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0177	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0178	1	0	0	1	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0179	1	0	1	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0180	1	0	0	0	1	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0181	1	0	1	0	0	0	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	g0182	1	1	0	0	0	0	ATXN1	chr6	16294112	16766460
ATXN2L_chr16_28817999_28842232	0/0	g0001	53	7	8	24	4	10	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	1/0	g0002	52	2	14	25	5	5	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0003	33	1	12	16	1	3	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/1	g0004	21	2	16	0	1	1	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0005	14	0	0	14	0	0	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0006	14	0	0	9	0	5	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0007	10	9	1	0	0	0	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0008	10	10	0	0	0	0	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0009	8	0	0	8	0	0	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0010	7	0	2	1	1	3	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0011	7	0	1	6	0	0	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	g0012	7	0	0	7	0	0	ATXN2L	chr16	28817999	28842232