JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATXN7L2_chr1_109478905_109497734	0/0	g0010	4	4	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0011	3	3	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0012	3	0	0	0	0	3	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0013	3	0	0	3	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0014	2	2	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0015	2	2	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0016	2	1	0	0	0	1	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0017	1	1	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0018	1	1	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0019	1	1	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0020	1	1	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0021	1	1	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0022	1	1	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0023	1	0	0	1	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0024	1	1	0	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0025	1	0	0	0	0	1	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0026	1	0	0	0	0	1	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0027	1	0	0	0	0	1	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0028	1	0	0	0	0	1	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0029	1	0	1	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0030	1	0	0	1	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0031	1	0	0	1	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0032	1	0	0	0	1	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0033	1	0	1	0	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0034	1	0	0	1	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0035	1	0	0	1	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	g0036	1	0	0	1	0	0	ATXN7L2	chr1	109478905	109497734
ATXN7L3B_chr12_74532835_74550430	1/1	g0000	408	96	72	184	10	44	ATXN7L3B	chr12	74532835	74550430
ATXN7L3_chr17_44186805_44204884	0/0	g0001	84	19	11	49	1	4	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/1	g0002	71	1	20	28	5	16	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0003	21	4	3	12	1	1	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0004	20	7	0	12	1	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	1/0	g0005	13	0	3	6	1	2	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0006	10	0	2	8	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0007	10	0	1	8	0	1	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0008	10	3	1	6	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0009	8	7	1	0	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0010	7	7	0	0	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0011	7	0	4	3	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0012	6	0	1	0	0	5	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0013	5	3	1	1	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0014	5	0	3	0	1	1	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0015	4	0	0	2	1	1	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0016	4	0	2	2	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0017	3	3	0	0	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0018	3	3	0	0	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0019	3	0	0	3	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0020	3	0	0	3	0	0	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0021	2	0	1	0	0	1	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	g0022	2	0	0	2	0	0	ATXN7L3	chr17	44186805	44204884