JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AUP1_chr2_74521652_74534706	0/0	g0013	1	1	0	0	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0014	1	0	0	1	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0015	1	0	1	0	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0016	1	1	0	0	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0017	1	1	0	0	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0018	1	1	0	0	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0019	1	0	1	0	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0020	1	0	0	1	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0021	1	0	0	1	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0022	1	1	0	0	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0023	1	0	0	1	0	0	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	g0024	1	0	0	1	0	0	AUP1	chr2	74521652	74534706
AURKAIP1_chr1_1368736_1380207	0/0	g0001	143	14	28	73	3	25	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/1	g0002	83	26	31	4	7	14	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	1/0	g0003	45	4	2	32	0	6	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0004	19	16	2	0	1	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0005	14	0	0	14	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0006	13	9	1	3	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0007	9	9	0	0	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0008	8	1	3	0	1	3	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0009	6	5	1	0	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0010	4	0	0	4	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0011	4	3	1	0	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0012	3	0	0	0	2	1	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0013	1	1	0	0	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0014	1	0	0	1	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0015	1	1	0	0	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0016	1	0	0	1	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0017	1	1	0	0	0	0	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0018	1	0	0	0	0	1	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	g0019	1	0	1	0	0	0	AURKAIP1	chr1	1368736	1380207
AURKA_chr20_56364390_56397215	0/0	g0001	15	1	1	11	0	2	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0002	12	0	1	11	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0003	9	0	0	9	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0004	9	0	2	3	1	3	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0005	7	0	3	0	2	2	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0006	6	0	0	5	1	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0007	6	0	0	6	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0008	6	0	0	6	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0009	5	0	0	5	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0010	3	0	0	2	0	1	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0011	3	0	0	2	1	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0012	3	3	0	0	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0013	3	3	0	0	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0014	3	0	0	2	0	1	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0015	3	0	2	0	0	1	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0016	2	2	0	0	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0017	2	0	1	0	1	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0018	2	0	0	2	0	0	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	g0019	2	0	0	2	0	0	AURKA	chr20	56364390	56397215