JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AURKA_chr20_56364390_56397215	0/0	g0270	1	0	0	0	0	1	AURKA	chr20	56364390	56397215
AURKB_chr17_8199734_8215575	0/0	g0001	52	0	12	31	1	8	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	1/0	g0002	52	7	11	30	0	3	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/1	g0003	26	3	11	3	5	3	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0004	24	2	9	13	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0005	21	11	3	0	1	6	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0006	17	0	7	5	2	3	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0007	17	0	0	17	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0008	15	1	2	5	1	6	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0009	11	0	0	11	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0010	10	0	0	10	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0011	9	0	0	9	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0012	9	0	0	9	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0013	8	0	3	4	0	1	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0014	7	7	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0015	6	2	2	0	0	2	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0016	6	4	0	0	1	1	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0017	5	5	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0018	5	0	1	0	2	2	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0019	5	3	2	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0020	5	5	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0021	5	5	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0022	4	0	0	4	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0023	4	0	2	2	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0024	3	0	0	3	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0025	3	3	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0026	3	0	2	0	1	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0027	3	3	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0028	3	0	1	2	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0029	3	3	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0030	3	3	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0031	2	0	1	0	1	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0032	2	0	0	2	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0033	2	0	0	2	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0034	2	2	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0035	2	2	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0036	2	2	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0037	2	0	2	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0038	2	0	2	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0039	2	2	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0040	2	0	0	0	2	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0041	2	0	2	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0042	2	0	0	2	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0043	2	2	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0044	1	0	0	1	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0045	1	0	0	1	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0046	1	0	0	1	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0047	1	0	0	1	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0048	1	1	0	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0049	1	1	0	0	0	0	AURKB	chr17	8199734	8215575