JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AURKB_chr17_8199734_8215575	0/0	g0100	1	0	1	0	0	0	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	g0101	1	0	1	0	0	0	AURKB	chr17	8199734	8215575
AURKC_chr19_57226023_57240548	0/0	g0001	147	8	23	99	3	14	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0002	47	30	8	0	3	6	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/1	g0003	46	8	11	19	0	7	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	1/0	g0004	42	1	6	27	2	5	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0005	39	5	9	17	2	6	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0006	12	12	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0007	6	2	0	2	1	1	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0008	4	0	3	0	1	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0009	4	0	2	1	0	1	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0010	4	4	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0011	4	4	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0012	3	0	2	0	1	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0013	3	0	3	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0014	3	1	2	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0015	3	3	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0016	3	3	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0017	3	3	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0018	2	0	2	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0019	2	0	0	2	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0020	2	2	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0021	2	0	0	1	0	1	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0022	2	0	0	1	0	1	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0023	2	2	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0024	2	2	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0025	2	0	0	2	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0026	2	0	0	2	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0027	1	0	0	0	1	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0028	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0029	1	0	0	0	1	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0030	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0031	1	0	0	1	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0032	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0033	1	0	0	0	1	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0034	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0035	1	0	1	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0036	1	0	1	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0037	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0038	1	0	1	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0039	1	0	0	1	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0040	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0041	1	0	0	1	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0042	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0043	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0044	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	g0045	1	1	0	0	0	0	AURKC	chr19	57226023	57240548
AUTS2_chr7_69593475_70798506	0/0	g0001	1	0	0	0	1	0	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	g0002	1	1	0	0	0	0	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	g0003	1	1	0	0	0	0	AUTS2	chr7	69593475	70798506