JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AVPR2_chrX_153899673_153912166	0/0	g0007	1	0	0	1	0	0	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	g0008	1	0	0	1	0	0	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	g0009	1	0	0	1	0	0	AVPR2	chrX	153899673	153912166
AVP_chr20_3077556_3089724	0/1	g0001	202	21	49	101	5	25	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	1/0	g0002	79	2	15	43	8	10	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0003	36	9	1	23	0	3	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0004	27	8	2	17	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0005	22	3	6	6	2	5	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0006	13	13	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0007	9	9	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0008	9	1	0	8	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0009	7	0	2	3	1	1	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0010	6	6	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0011	5	0	2	2	0	1	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0012	5	0	0	4	0	1	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0013	5	0	0	5	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0014	5	4	1	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0015	4	0	4	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0016	3	0	0	2	0	1	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0017	3	2	1	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0018	3	3	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0019	3	3	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0020	2	0	0	2	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0021	2	0	0	2	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0022	2	2	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0023	1	0	1	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0024	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0025	1	0	1	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0026	1	0	0	0	0	1	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0027	1	0	0	1	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0028	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0029	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0030	1	0	0	1	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0031	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0032	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0033	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0034	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0035	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0036	1	0	1	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0037	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	g0038	1	1	0	0	0	0	AVP	chr20	3077556	3089724
AWAT1_chrX_70229655_70245659	0/0	g0001	92	3	18	61	3	7	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0002	41	13	2	21	0	5	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0003	21	4	9	3	2	3	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0004	16	2	7	3	1	3	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0005	12	5	2	3	0	2	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0006	10	0	0	10	0	0	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0007	8	0	3	5	0	0	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0008	7	3	0	2	2	0	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	g0009	6	5	0	0	0	1	AWAT1	chrX	70229655	70245659