JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AZIN2_chr1_33076153_33128492	0/0	g0201	1	0	0	0	1	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/1	g0202	1	0	0	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0203	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	1/0	g0204	1	0	0	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0205	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0206	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0207	1	0	0	0	0	1	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0208	1	0	0	0	0	1	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0209	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0210	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0211	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0212	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0213	1	0	0	1	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0214	1	0	0	1	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0215	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0216	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0217	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0218	1	0	1	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0219	1	1	0	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0220	1	0	0	1	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0221	1	1	0	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0222	1	1	0	0	0	0	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	g0223	1	1	0	0	0	0	AZIN2	chr1	33076153	33128492
AZU1_chr19_822837_837018	0/0	g0001	98	4	16	63	5	10	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0002	33	11	14	2	0	6	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0003	31	0	3	26	0	2	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/1	g0004	29	1	3	16	4	4	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0005	16	0	6	8	0	2	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0006	14	2	8	2	0	2	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0007	9	9	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0008	8	8	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0009	8	0	2	6	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0010	7	0	3	0	3	1	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0011	7	0	5	2	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0012	5	0	2	3	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0013	5	1	0	2	0	2	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0014	5	4	1	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0015	4	4	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0016	4	4	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0017	4	0	2	0	1	1	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0018	4	0	3	0	1	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0019	4	3	1	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0020	4	0	1	0	1	2	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0021	4	4	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0022	4	0	0	4	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0023	4	4	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0024	3	0	0	1	0	2	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0025	3	3	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0026	3	0	0	3	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0027	2	2	0	0	0	0	AZU1	chr19	822837	837018