JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AZU1_chr19_822837_837018	0/0	g0078	1	0	0	1	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0079	1	0	0	1	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0080	1	0	0	1	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0081	1	0	0	1	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0082	1	0	0	1	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0083	1	1	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0084	1	1	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0085	1	1	0	0	0	0	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	g0086	1	1	0	0	0	0	AZU1	chr19	822837	837018
B2M_chr15_44706517_44723145	0/1	g0001	210	39	47	91	7	25	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0002	35	0	9	18	1	7	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0003	24	7	3	10	0	4	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0004	15	2	6	0	3	4	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0005	14	4	2	8	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0006	13	0	0	13	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0007	6	4	2	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0008	6	1	0	5	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0009	5	5	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0010	5	5	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0011	4	4	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0012	4	4	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0013	3	0	1	0	1	1	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0014	2	0	0	2	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0015	2	1	0	0	0	1	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0016	2	0	2	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0017	2	0	0	2	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0018	2	0	1	0	0	1	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0019	2	0	0	0	2	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0020	2	0	1	0	1	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0021	2	2	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0022	2	0	0	0	0	2	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0023	2	2	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0024	1	0	0	0	0	1	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0025	1	0	0	1	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0026	1	0	0	1	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0027	1	0	1	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0028	1	0	0	1	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0029	1	0	0	0	0	1	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0030	1	1	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0031	1	1	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0032	1	0	0	0	1	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0033	1	0	1	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0034	1	0	1	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0035	1	1	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0036	1	0	0	1	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0037	1	1	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0038	1	0	0	1	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0039	1	0	0	1	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0040	1	1	0	0	0	0	B2M	chr15	44706517	44723145
B2M_chr15_44706517_44723145	0/0	g0041	1	1	0	0	0	0	B2M	chr15	44706517	44723145