JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
B3GNT3_chr19_17790138_17818576	0/0	g0288	1	1	0	0	0	0	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	g0289	1	0	0	0	0	1	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	g0290	1	0	0	0	0	1	B3GNT3	chr19	17790138	17818576
B3GNT4_chr12_122198709_122213952	1/1	g0001	165	23	48	65	10	17	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0002	115	1	12	88	3	11	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0003	22	6	3	3	2	8	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0004	20	3	0	15	0	2	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0005	15	12	1	0	0	2	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0006	13	13	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0007	10	0	0	10	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0008	8	8	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0009	6	6	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0010	4	4	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0011	4	2	1	0	1	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0012	3	3	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0013	3	3	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0014	3	2	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0015	3	0	0	3	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0016	2	2	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0017	2	2	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0018	2	2	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0019	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0020	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0021	1	1	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0022	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0023	1	0	0	1	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0024	1	0	0	1	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0025	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0026	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0027	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0028	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0029	1	1	0	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	g0030	1	0	1	0	0	0	B3GNT4	chr12	122198709	122213952
B3GNT5_chr3_183248253_183278385	0/0	g0001	30	0	9	18	2	1	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0002	13	2	0	8	0	3	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0003	11	6	2	0	3	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0004	9	0	5	2	2	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0005	9	1	0	5	0	3	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0006	8	2	0	6	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0007	8	0	1	7	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0008	8	4	1	2	1	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0009	6	0	0	6	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0010	6	0	6	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0011	5	1	2	1	0	1	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0012	4	0	0	4	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0013	4	2	2	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0014	3	0	0	3	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0015	3	0	0	1	0	2	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0016	3	0	0	3	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0017	3	0	0	3	0	0	B3GNT5	chr3	183248253	183278385