JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
B3GNT5_chr3_183248253_183278385	0/0	g0218	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0219	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0220	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0221	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0222	1	0	1	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0223	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0224	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0225	1	0	1	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0226	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0227	1	0	1	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0228	1	0	1	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0229	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0230	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0231	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0232	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0233	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0234	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0235	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0236	1	1	0	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	g0237	1	0	1	0	0	0	B3GNT5	chr3	183248253	183278385
B3GNT6_chr11_77029398_77046973	0/0	g0001	96	2	28	46	5	15	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0002	74	2	15	41	3	13	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/1	g0003	58	3	11	32	4	7	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0004	49	25	4	15	2	3	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0005	21	10	8	0	3	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0006	15	3	3	8	0	1	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0007	13	0	0	13	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0008	7	7	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0009	5	4	1	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0010	4	0	0	4	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0011	4	4	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0012	3	0	0	3	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0013	3	0	1	0	0	2	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0014	3	0	3	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0015	3	3	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0016	3	2	1	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0017	3	3	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0018	3	3	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0019	3	0	0	3	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0020	3	3	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0021	3	3	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0022	2	0	0	2	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0023	2	2	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0024	2	0	0	2	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0025	2	2	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0026	2	0	1	1	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0027	2	2	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0028	1	0	0	0	0	1	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0029	1	1	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	g0030	1	0	1	0	0	0	B3GNT6	chr11	77029398	77046973