JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
B3GNT6_chr11_77029398_77046973	0/0	g0081	1	1	0	0	0	0	B3GNT6	chr11	77029398	77046973
B3GNT7_chr2_231390710_231406164	0/1	g0001	279	64	39	134	11	30	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	1/0	g0002	88	0	16	50	4	17	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0003	22	21	1	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0004	6	6	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0005	5	0	5	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0006	3	3	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0007	3	0	2	0	1	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0008	2	0	0	2	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0009	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0010	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0011	1	0	1	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0012	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0013	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0014	1	0	0	0	0	1	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0015	1	1	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0016	1	1	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0017	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0018	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0019	1	1	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0020	1	0	1	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0021	1	1	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0022	1	1	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0023	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0024	1	1	0	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0025	1	0	1	0	0	0	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	g0026	1	0	0	1	0	0	B3GNT7	chr2	231390710	231406164
B3GNT8_chr19_41420359_41432374	0/0	g0001	168	24	26	82	10	26	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	1/0	g0002	152	20	31	83	4	13	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/1	g0003	14	3	7	0	2	1	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0004	13	0	0	13	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0005	9	9	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0006	9	8	1	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0007	7	7	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0008	6	5	1	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0009	5	1	2	2	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0010	4	4	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0011	3	3	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0012	3	3	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0013	3	0	3	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0014	2	0	0	2	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0015	2	2	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0016	2	0	0	1	0	1	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0017	2	2	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0018	1	0	0	0	0	1	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0019	1	0	1	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0020	1	1	0	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0021	1	0	1	0	0	0	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0022	1	0	0	0	0	1	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	g0023	1	0	1	0	0	0	B3GNT8	chr19	41420359	41432374