JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACAN_chr15_88798436_88880353	0/0	g0351	1	0	0	0	1	0	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0352	1	0	1	0	0	0	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0353	1	0	0	0	1	0	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0354	1	0	1	0	0	0	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0355	1	0	1	0	0	0	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0356	1	0	0	1	0	0	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0357	1	0	0	0	0	1	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0358	1	0	0	0	0	1	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0359	1	0	0	0	0	1	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0360	1	0	0	0	0	1	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0361	1	0	0	0	0	1	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0362	1	0	0	1	0	0	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	g0363	1	0	1	0	0	0	ACAN	chr15	88798436	88880353
ACAP1_chr17_7331529_7356477	0/0	g0001	34	0	8	16	2	8	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	1/0	g0002	25	1	4	17	2	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0003	24	0	0	22	0	2	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0004	17	8	0	9	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0005	14	0	2	12	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0006	12	0	3	5	1	3	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0007	10	0	0	10	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0008	10	0	0	9	0	1	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/1	g0009	10	0	6	0	2	1	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0010	9	5	3	1	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0011	8	0	0	8	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0012	8	0	5	0	1	2	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0013	7	0	0	7	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0014	6	0	2	1	1	2	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0015	6	0	0	1	0	5	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0016	5	0	5	0	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0017	4	2	2	0	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0018	4	0	3	0	1	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0019	4	0	0	3	0	1	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0020	4	0	1	0	0	3	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0021	4	0	0	4	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0022	4	0	0	4	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0023	3	3	0	0	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0024	3	0	2	1	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0025	3	0	2	1	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0026	3	3	0	0	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0027	3	3	0	0	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0028	3	0	0	3	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0029	3	0	0	3	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0030	2	2	0	0	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0031	2	2	0	0	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0032	2	0	0	2	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0033	2	0	0	2	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0034	2	0	0	2	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0035	2	0	0	2	0	0	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0036	2	0	0	0	0	2	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	g0037	2	1	1	0	0	0	ACAP1	chr17	7331529	7356477