JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
B4GALT7_chr5_177595132_177615330	1/0	g0167	1	0	0	0	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0168	1	0	0	1	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0169	1	0	1	0	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0170	1	0	1	0	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0171	1	1	0	0	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0172	1	0	0	0	1	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0173	1	0	0	1	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0174	1	0	0	1	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0175	1	0	0	1	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0176	1	1	0	0	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0177	1	1	0	0	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0178	1	0	0	0	0	1	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0179	1	0	0	1	0	0	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	g0180	1	0	0	0	0	1	B4GALT7	chr5	177595132	177615330
B4GAT1_chr11_66340374_66352629	1/1	g0001	304	54	64	134	16	34	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0002	72	29	7	33	2	1	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0003	9	0	0	9	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0004	9	0	1	8	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0005	6	0	2	4	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0006	4	0	0	4	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0007	2	2	0	0	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0008	1	1	0	0	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0009	1	0	0	0	0	1	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0010	1	1	0	0	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0011	1	1	0	0	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0012	1	1	0	0	0	0	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	g0013	1	1	0	0	0	0	B4GAT1	chr11	66340374	66352629
B9D1_chr17_19338175_19367723	0/0	g0001	46	1	8	29	0	8	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0002	26	1	13	0	3	9	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	1/0	g0003	21	1	3	12	0	4	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0004	20	0	3	13	3	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0005	15	0	0	15	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0006	12	1	8	0	2	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0007	10	9	1	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0008	9	2	1	5	0	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0009	8	4	1	3	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0010	7	7	0	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0011	6	5	1	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0012	6	5	1	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0013	5	0	0	5	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0014	5	0	0	4	0	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0015	4	4	0	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0016	4	4	0	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0017	4	4	0	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0018	3	0	0	3	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0019	3	0	0	2	0	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0020	3	0	0	3	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0021	3	1	0	2	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0022	3	0	0	0	0	3	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0023	3	3	0	0	0	0	B9D1	chr17	19338175	19367723