JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
B9D1_chr17_19338175_19367723	0/0	g0124	1	0	0	0	0	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0125	1	0	0	1	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0126	1	0	0	0	0	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0127	1	0	1	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0128	1	0	0	1	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0129	1	0	0	1	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0130	1	0	0	1	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0131	1	0	0	1	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0132	1	0	1	0	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0133	1	0	0	0	0	1	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0134	1	0	0	1	0	0	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	g0135	1	1	0	0	0	0	B9D1	chr17	19338175	19367723
B9D2_chr19_41349417_41369149	1/0	g0001	90	11	22	47	3	6	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/1	g0002	48	9	9	20	2	7	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0003	35	0	0	30	0	5	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0004	16	6	3	6	0	1	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0005	12	2	4	4	0	2	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0006	10	3	3	0	0	4	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0007	6	0	4	0	1	1	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0008	6	0	1	4	1	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0009	4	0	0	2	0	2	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0010	4	0	3	0	1	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0011	4	3	1	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0012	4	0	1	3	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0013	3	3	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0014	3	3	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0015	3	3	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0016	3	3	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0017	3	0	3	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0018	3	0	0	3	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0019	3	0	2	1	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0020	3	2	1	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0021	2	2	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0022	2	1	1	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0023	2	2	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0024	2	2	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0025	2	0	2	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0026	2	0	0	2	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0027	2	0	0	2	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0028	2	0	0	0	0	2	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0029	1	1	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0030	1	1	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0031	1	1	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0032	1	0	0	0	0	1	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0033	1	0	0	0	0	1	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0034	1	1	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0035	1	1	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0036	1	1	0	0	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0037	1	0	0	1	0	0	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	g0038	1	1	0	0	0	0	B9D2	chr19	41349417	41369149