JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BABAM2_chr2_27885729_28343901	0/0	g0150	1	0	0	1	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0151	1	0	0	1	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0152	1	0	0	1	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0153	1	0	1	0	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0154	1	0	1	0	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0155	1	0	0	1	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0156	1	0	1	0	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0157	1	0	0	1	0	0	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	g0158	1	0	0	1	0	0	BABAM2	chr2	27885729	28343901
BACE1_chr11_117280698_117321256	0/0	g0001	13	2	5	6	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0002	10	0	2	6	2	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0003	10	0	0	7	0	3	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0004	9	0	0	8	0	1	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0005	7	6	0	1	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0006	6	0	1	5	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0007	5	3	2	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0008	5	0	0	5	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0009	5	4	1	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0010	5	0	0	5	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0011	5	0	2	3	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0012	5	3	2	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0013	4	0	0	1	0	3	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0014	4	0	0	4	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0015	4	4	0	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0016	4	0	0	4	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0017	4	0	0	4	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0018	4	0	0	4	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0019	4	0	0	4	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0020	4	0	0	0	0	4	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0021	4	2	2	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0022	3	0	0	3	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0023	3	0	3	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0024	3	0	0	3	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0025	3	0	0	3	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0026	3	0	0	2	1	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0027	3	3	0	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0028	3	0	3	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0029	3	0	2	0	0	1	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0030	3	0	3	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0031	3	0	2	0	1	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0032	3	0	0	3	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0033	3	0	1	0	0	2	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0034	3	3	0	0	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0035	2	0	0	0	0	2	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0036	2	0	0	2	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0037	2	0	0	2	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0038	2	0	0	0	0	2	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0039	2	0	1	0	1	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0040	2	0	0	2	0	0	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	g0041	2	0	0	2	0	0	BACE1	chr11	117280698	117321256