JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BAD_chr11_64264830_64289665	0/0	g0313	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0314	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0315	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0316	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0317	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0318	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0319	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0320	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0321	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0322	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0323	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0324	1	0	1	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0325	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0326	1	0	0	0	1	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0327	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0328	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0329	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0330	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0331	1	0	0	0	0	1	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0332	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0333	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0334	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0335	1	0	0	0	1	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0336	1	0	1	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0337	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0338	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0339	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0340	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0341	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0342	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0343	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0344	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0345	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0346	1	0	1	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0347	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0348	1	0	1	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0349	1	1	0	0	0	0	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	g0350	1	0	0	1	0	0	BAD	chr11	64264830	64289665
BAG1_chr9_33247471_33269708	0/1	g0001	73	6	19	35	2	10	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0002	29	0	9	15	1	4	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0003	22	0	1	18	0	3	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0004	17	8	1	7	0	1	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0005	11	0	1	10	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0006	11	11	0	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0007	11	0	4	7	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0008	6	6	0	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0009	4	0	0	4	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0010	4	3	1	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0011	4	0	0	4	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0012	4	0	3	1	0	0	BAG1	chr9	33247471	33269708