JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BAG1_chr9_33247471_33269708	0/0	g0113	1	0	0	1	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0114	1	0	0	1	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0115	1	1	0	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0116	1	0	0	0	1	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0117	1	0	1	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	1/0	g0118	1	0	0	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0119	1	1	0	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0120	1	1	0	0	0	0	BAG1	chr9	33247471	33269708
BAG1_chr9_33247471_33269708	0/0	g0121	1	1	0	0	0	0	BAG1	chr9	33247471	33269708
BAG2_chr6_57167326_57194833	1/1	g0001	91	17	27	32	4	9	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0002	28	2	8	13	2	3	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0003	21	4	4	9	1	3	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0004	10	10	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0005	6	3	1	2	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0006	5	5	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0007	4	4	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0008	3	0	0	3	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0009	3	0	0	1	1	1	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0010	3	0	2	0	0	1	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0011	3	3	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0012	3	3	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0013	3	0	1	2	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0014	2	2	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0015	2	0	0	2	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0016	2	1	0	0	1	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0017	2	0	2	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0018	2	2	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0019	2	0	0	0	0	2	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0020	2	1	0	0	1	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0021	2	2	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0022	2	2	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0023	2	0	0	0	0	2	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0024	2	2	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0025	2	0	2	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0026	1	1	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0027	1	1	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0028	1	1	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0029	1	0	0	1	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0030	1	1	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0031	1	0	1	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0032	1	1	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0033	1	1	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0034	1	0	1	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0035	1	0	0	1	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0036	1	0	0	0	0	1	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0037	1	1	0	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0038	1	0	1	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0039	1	0	0	0	0	1	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0040	1	0	1	0	0	0	BAG2	chr6	57167326	57194833
BAG2_chr6_57167326_57194833	0/0	g0041	1	0	0	1	0	0	BAG2	chr6	57167326	57194833