JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BAIAP2_chr17_81030151_81122434	0/0	g0359	1	0	0	1	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0360	1	0	0	1	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0361	1	0	0	1	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0362	1	0	0	1	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0363	1	0	0	1	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0364	1	0	0	1	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0365	1	0	0	1	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0366	1	0	0	0	0	1	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0367	1	0	0	0	0	1	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0368	1	1	0	0	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	1/0	g0369	1	0	0	0	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0370	1	0	1	0	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0371	1	0	0	0	0	1	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0372	1	0	0	0	1	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0373	1	1	0	0	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0374	1	1	0	0	0	0	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	g0375	1	0	1	0	0	0	BAIAP2	chr17	81030151	81122434
BAIAP3_chr16_1328645_1354439	0/0	g0001	61	2	2	48	2	7	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0002	20	1	3	12	0	4	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0003	9	0	4	5	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0004	9	0	4	0	3	2	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0005	7	1	1	0	1	4	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0006	7	0	0	5	1	1	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0007	6	0	0	4	0	2	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0008	6	0	1	5	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0009	5	0	5	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0010	5	5	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0011	4	1	1	0	1	1	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0012	4	0	4	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0013	4	0	4	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0014	4	4	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0015	3	2	1	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0016	3	3	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0017	3	1	0	2	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0018	3	3	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0019	3	1	2	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0020	3	3	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0021	3	0	0	0	3	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0022	3	0	0	3	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0023	3	1	2	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0024	3	0	0	3	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0025	3	2	1	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0026	3	3	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0027	2	2	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0028	2	2	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0029	2	0	0	2	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0030	2	0	2	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0031	2	2	0	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0032	2	0	2	0	0	0	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	g0033	2	0	0	2	0	0	BAIAP3	chr16	1328645	1354439