JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BARD1_chr2_214720646_214814683	0/0	g0307	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0308	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0309	1	0	0	0	0	1	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0310	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0311	1	0	1	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0312	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0313	1	0	1	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0314	1	0	1	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0315	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0316	1	1	0	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0317	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0318	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0319	1	1	0	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0320	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0321	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0322	1	1	0	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0323	1	0	1	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0324	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0325	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0326	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0327	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0328	1	0	0	0	0	1	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0329	1	0	0	0	1	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0330	1	1	0	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0331	1	1	0	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0332	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0333	1	0	1	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0334	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0335	1	0	0	1	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0336	1	1	0	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0337	1	1	0	0	0	0	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	g0338	1	0	1	0	0	0	BARD1	chr2	214720646	214814683
BARHL1_chr9_132577606_132595252	0/0	g0001	35	1	11	19	3	1	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0002	33	5	3	22	0	3	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0003	31	0	0	29	0	2	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0004	27	5	4	10	5	3	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0005	23	1	8	7	3	4	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/1	g0006	23	0	3	14	4	1	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0007	22	1	3	14	0	4	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0008	17	5	4	5	0	3	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0009	16	2	1	11	0	2	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	1/0	g0010	15	0	4	4	2	4	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0011	12	0	0	12	0	0	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0012	12	0	10	2	0	0	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0013	10	1	0	4	0	5	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0014	9	0	0	9	0	0	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0015	9	0	1	7	0	1	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0016	7	7	0	0	0	0	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0017	7	1	6	0	0	0	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	g0018	6	0	0	6	0	0	BARHL1	chr9	132577606	132595252