JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BASP1_chr5_17212631_17281834	0/0	g0340	1	1	0	0	0	0	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	g0341	1	1	0	0	0	0	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	g0342	1	1	0	0	0	0	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	g0343	1	0	0	1	0	0	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	g0344	1	1	0	0	0	0	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	g0345	1	0	0	1	0	0	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	g0346	1	0	1	0	0	0	BASP1	chr5	17212631	17281834
BATF2_chr11_64982945_65001971	1/0	g0001	103	18	9	64	2	9	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0002	39	10	12	12	3	2	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0003	37	7	14	14	1	1	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0004	25	0	0	25	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0005	16	0	0	16	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0006	16	0	4	4	0	8	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0007	9	0	1	7	0	1	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0008	8	0	0	8	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0009	8	0	3	3	1	1	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0010	8	8	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0011	7	0	4	0	2	1	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0012	7	5	2	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0013	7	7	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0014	6	6	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0015	4	0	3	0	1	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0016	4	1	1	1	0	1	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0017	4	0	0	4	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0018	4	0	3	0	0	1	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0019	3	1	2	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0020	3	1	0	0	0	2	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0021	3	0	0	0	3	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0022	3	0	0	3	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0023	3	1	0	2	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0024	3	0	0	1	0	2	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0025	3	3	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0026	2	0	0	2	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0027	2	2	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0028	2	2	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0029	2	0	0	0	0	2	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0030	2	0	1	1	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0031	2	0	0	2	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0032	2	0	0	0	0	2	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0033	2	0	0	0	2	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0034	2	2	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0035	2	2	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0036	1	1	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0037	1	0	0	1	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0038	1	0	0	1	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0039	1	0	0	1	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/1	g0040	1	0	0	0	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0041	1	0	0	1	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0042	1	0	0	1	0	0	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	g0043	1	0	0	1	0	0	BATF2	chr11	64982945	65001971