JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BAZ2B_chr2_159313979_159621548	0/0	g0192	1	0	1	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0193	1	0	1	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0194	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0195	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0196	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0197	1	0	1	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0198	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0199	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0200	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0201	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0202	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0203	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0204	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0205	1	0	1	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0206	1	0	1	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0207	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0208	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0209	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0210	1	0	1	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/1	g0211	1	0	0	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0212	1	0	1	0	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0213	1	0	0	1	0	0	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0214	1	0	0	0	0	1	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0215	1	0	0	0	0	1	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	g0216	1	0	0	0	1	0	BAZ2B	chr2	159313979	159621548
BBC3_chr19_47215824_47236199	0/0	g0001	14	3	1	4	0	6	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0002	12	1	2	8	0	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0003	9	1	2	4	0	2	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0004	8	0	4	3	1	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0005	8	6	1	0	0	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0006	8	0	0	4	0	4	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0007	8	0	1	6	0	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0008	7	0	1	5	0	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	1/0	g0009	6	1	1	0	2	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0010	6	6	0	0	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0011	4	0	0	4	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0012	4	1	0	3	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0013	4	0	0	4	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0014	4	0	1	3	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0015	4	1	0	2	0	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0016	4	0	1	2	1	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0017	4	0	3	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0018	4	0	0	4	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0019	4	0	0	4	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0020	4	0	3	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0021	4	0	0	4	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0022	4	0	0	4	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0023	4	0	0	4	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0024	3	1	0	2	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0025	3	2	0	1	0	0	BBC3	chr19	47215824	47236199