JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BBC3_chr19_47215824_47236199	0/0	g0226	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0227	1	0	0	0	0	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0228	1	1	0	0	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0229	1	0	0	0	0	1	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0230	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0231	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0232	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0233	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0234	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0235	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0236	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0237	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0238	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0239	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0240	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0241	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0242	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0243	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	g0244	1	0	0	1	0	0	BBC3	chr19	47215824	47236199
BBIP1_chr10_110893730_110924180	0/0	g0001	42	1	8	29	0	4	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0002	33	5	0	24	1	3	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0003	31	1	8	18	3	1	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/1	g0004	20	0	8	7	0	4	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0005	16	2	0	14	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0006	10	0	1	7	0	2	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0007	9	1	5	0	1	2	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0008	8	0	0	8	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0009	7	0	0	7	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0010	7	1	0	3	0	3	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0011	6	6	0	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0012	5	0	0	4	0	1	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0013	5	0	2	0	2	1	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0014	5	1	1	2	0	1	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0015	5	5	0	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0016	5	5	0	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0017	5	0	0	5	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0018	4	4	0	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0019	4	1	0	0	0	3	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0020	4	0	0	4	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0021	3	0	0	2	0	1	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0022	3	3	0	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0023	3	0	0	3	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0024	3	0	1	1	0	1	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0025	3	1	0	1	0	1	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0026	3	0	0	3	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0027	3	3	0	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0028	3	1	2	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0029	3	0	3	0	0	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0030	3	0	2	0	1	0	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	g0031	3	3	0	0	0	0	BBIP1	chr10	110893730	110924180