JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BBOX1_chr11_27035815_27132809	0/0	g0280	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	1/0	g0281	1	0	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0282	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0283	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0284	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0285	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0286	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0287	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0288	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0289	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0290	1	0	0	1	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0291	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0292	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0293	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0294	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0295	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	g0296	1	1	0	0	0	0	BBOX1	chr11	27035815	27132809
BBS10_chr12_76339474_76353415	0/1	g0001	263	32	56	139	9	26	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	1/0	g0002	53	11	12	20	3	6	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0003	23	0	0	23	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0004	13	11	2	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0005	13	13	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0006	7	0	0	4	0	3	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0007	7	1	0	0	2	4	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0008	7	0	3	0	0	4	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0009	5	5	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0010	4	4	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0011	3	3	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0012	2	1	1	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0013	1	1	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0014	1	0	0	1	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0015	1	0	0	1	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0016	1	0	1	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0017	1	0	0	1	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0018	1	0	1	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0019	1	1	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0020	1	0	0	1	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0021	1	0	0	0	0	1	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0022	1	1	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0023	1	1	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0024	1	0	0	1	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0025	1	1	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0026	1	0	0	1	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0027	1	1	0	0	0	0	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	g0028	1	1	0	0	0	0	BBS10	chr12	76339474	76353415
BBS12_chr4_122727704_122749939	0/0	g0001	51	1	9	35	0	6	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0002	21	1	4	12	0	4	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0003	16	3	5	7	0	1	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0004	13	0	3	10	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0005	11	0	3	6	0	2	BBS12	chr4	122727704	122749939