JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BBS12_chr4_122727704_122749939	0/0	g0106	1	0	1	0	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0107	1	0	0	1	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0108	1	0	0	1	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0109	1	1	0	0	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0110	1	0	0	0	1	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0111	1	0	0	1	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0112	1	0	0	0	0	1	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0113	1	0	0	0	0	1	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0114	1	0	0	1	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0115	1	0	1	0	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0116	1	1	0	0	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0117	1	0	1	0	0	0	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	g0118	1	0	1	0	0	0	BBS12	chr4	122727704	122749939
BBS1_chr11_66505635_66538598	0/0	g0001	21	4	2	13	0	2	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	1/0	g0002	20	3	5	3	0	8	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0003	10	4	0	5	0	1	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0004	7	0	4	0	1	2	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0005	5	0	0	5	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0006	5	1	0	4	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0007	5	0	0	5	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0008	5	5	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0009	5	3	1	0	1	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0010	4	0	0	4	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0011	4	0	0	4	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0012	4	0	0	4	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0013	4	3	1	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0014	4	0	1	0	3	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0015	4	0	1	1	0	2	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0016	4	0	2	1	0	1	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0017	4	0	0	4	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0018	4	0	3	0	1	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0019	3	0	2	0	1	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0020	3	0	0	3	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0021	3	3	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0022	3	0	0	3	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0023	3	2	1	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0024	2	2	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0025	2	0	0	2	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0026	2	0	0	2	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0027	2	0	0	2	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0028	2	0	1	0	1	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0029	2	0	0	2	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0030	2	0	0	2	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0031	2	0	0	2	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0032	2	2	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0033	2	0	2	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0034	2	0	1	0	0	1	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0035	2	0	0	0	0	2	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0036	2	0	1	1	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0037	2	0	0	2	0	0	BBS1	chr11	66505635	66538598