JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BBS1_chr11_66505635_66538598	0/0	g0238	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0239	1	0	0	1	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0240	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0241	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0242	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0243	1	0	0	0	0	1	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0244	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0245	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0246	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0247	1	0	1	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0248	1	0	0	1	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0249	1	0	0	1	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0250	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0251	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0252	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0253	1	0	1	0	0	0	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	g0254	1	1	0	0	0	0	BBS1	chr11	66505635	66538598
BBS2_chr16_56479385_56525024	0/0	g0001	18	1	4	7	1	5	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0002	13	0	3	10	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0003	12	0	0	12	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0004	10	5	0	2	2	1	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0005	8	0	3	0	2	3	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0006	7	0	0	7	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0007	7	0	1	4	0	2	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0008	6	1	0	3	0	2	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0009	5	1	0	4	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0010	4	4	0	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0011	3	0	0	2	0	1	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0012	3	3	0	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0013	3	0	1	2	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0014	3	0	0	3	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0015	3	0	1	1	1	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0016	3	0	3	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0017	3	0	0	3	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0018	3	0	0	3	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0019	3	0	0	3	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0020	2	0	0	0	0	2	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0021	2	1	1	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0022	2	2	0	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0023	2	0	0	2	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0024	2	0	2	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0025	2	1	1	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0026	2	0	0	2	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0027	2	0	0	2	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0028	2	0	0	2	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0029	2	1	0	1	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0030	2	0	0	2	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0031	2	2	0	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0032	2	2	0	0	0	0	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	g0033	2	0	1	1	0	0	BBS2	chr16	56479385	56525024