JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BBS4_chr15_72681207_72743473	0/0	g0353	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0354	1	0	0	0	0	1	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0355	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0356	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0357	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0358	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0359	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0360	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0361	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0362	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0363	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0364	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0365	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0366	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0367	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0368	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0369	1	0	1	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0370	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0371	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0372	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0373	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0374	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0375	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0376	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0377	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0378	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0379	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0380	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0381	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0382	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0383	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0384	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0385	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0386	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0387	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0388	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0389	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0390	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0391	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0392	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0393	1	1	0	0	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0394	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	g0395	1	0	0	1	0	0	BBS4	chr15	72681207	72743473
BBS5_chr2_169474494_169511655	0/0	g0001	38	0	7	25	2	4	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/1	g0002	9	1	3	3	0	1	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	g0003	9	8	1	0	0	0	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	g0004	8	0	0	7	1	0	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	g0005	8	0	2	2	1	3	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	g0006	7	0	1	4	0	2	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	g0007	6	0	1	0	1	4	BBS5	chr2	169474494	169511655