JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BBX_chr3_107517962_107816339	0/0	g0219	1	0	0	1	0	0	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	g0220	1	0	0	1	0	0	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	g0221	1	0	0	1	0	0	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	g0222	1	0	1	0	0	0	BBX	chr3	107517962	107816339
BCAM_chr19_44804103_44826421	0/0	g0001	36	2	11	20	1	2	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0002	34	20	5	2	3	4	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0003	33	1	13	9	4	6	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0004	20	0	8	5	2	5	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0005	17	1	5	9	1	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0006	16	0	0	14	0	2	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0007	15	0	0	15	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0008	10	0	0	9	0	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0009	8	5	0	3	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0010	7	0	2	0	1	4	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0011	6	0	0	6	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0012	6	0	2	4	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0013	6	0	0	6	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0014	5	4	1	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0015	5	0	0	5	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0016	4	0	0	3	0	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0017	4	0	3	0	1	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0018	4	0	3	0	0	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0019	4	0	0	3	0	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	1/0	g0020	4	0	0	0	3	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0021	4	3	0	1	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0022	3	3	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0023	3	3	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0024	3	3	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0025	3	3	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0026	3	0	0	2	0	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0027	3	1	1	1	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0028	3	0	0	3	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0029	2	2	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0030	2	0	0	1	0	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0031	2	2	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/1	g0032	2	0	0	0	0	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0033	2	0	0	0	0	2	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0034	2	0	0	2	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0035	2	2	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0036	2	0	1	1	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0037	2	0	1	0	1	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0038	2	0	0	0	1	1	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0039	2	2	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0040	2	0	0	2	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0041	2	0	1	1	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0042	2	0	0	0	0	2	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0043	2	2	0	0	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0044	2	0	0	2	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0045	2	0	0	2	0	0	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	g0046	2	2	0	0	0	0	BCAM	chr19	44804103	44826421