JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BCAS1_chr20_53938541_54075594	0/0	g0321	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0322	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0323	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0324	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0325	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0326	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0327	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0328	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0329	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0330	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0331	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0332	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0333	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0334	1	0	0	0	0	1	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0335	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0336	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0337	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0338	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0339	1	0	1	0	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0340	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0341	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0342	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0343	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0344	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0345	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0346	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0347	1	0	0	0	1	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0348	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0349	1	0	1	0	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0350	1	0	0	0	0	1	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0351	1	0	0	0	0	1	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0352	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0353	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0354	1	0	0	0	0	1	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0355	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0356	1	0	0	1	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0357	1	1	0	0	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0358	1	1	0	0	0	0	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	g0359	1	1	0	0	0	0	BCAS1	chr20	53938541	54075594
BCAS2_chr1_114562557_114586615	0/0	g0001	19	0	5	14	0	0	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0002	18	0	3	15	0	0	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0003	17	0	4	13	0	0	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0004	15	3	4	1	3	4	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0005	11	0	0	8	0	3	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0006	11	0	7	3	0	1	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0007	10	6	0	3	0	1	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0008	9	0	1	7	0	1	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0009	9	1	3	3	1	1	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0010	8	0	1	7	0	0	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	g0011	8	0	3	2	1	2	BCAS2	chr1	114562557	114586615