JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
BCAS3_chr17_60672851_61397831	0/0	g0047	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0048	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0049	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0050	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0051	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0052	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0053	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0054	1	0	1	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0055	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0056	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0057	1	0	1	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0058	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0059	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0060	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0061	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0062	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0063	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0064	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0065	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0066	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0067	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0068	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0069	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0070	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0071	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0072	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0073	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	g0074	1	1	0	0	0	BCAS3	chr17	60672851	61397831
BCAS4_chr20_50790061_50882177	0/0	g0001	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0002	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0003	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0004	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0005	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0006	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0007	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0008	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0009	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0010	1	0	0	1	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0011	1	0	0	1	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0012	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0013	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0014	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0015	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0016	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0017	1	1	0	0	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0018	1	0	0	1	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0019	1	0	0	1	0	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0020	1	0	0	0	1	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0021	1	0	0	0	1	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	g0022	1	0	0	0	1	BCAS4	chr20	50790061	50882177