JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BCAT2_chr19_48790064_48816029	0/0	g0231	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0232	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0233	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0234	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0235	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0236	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0237	1	0	0	0	1	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0238	1	0	0	0	1	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0239	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0240	1	0	1	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0241	1	0	0	1	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0242	1	1	0	0	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0243	1	0	0	1	0	0	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0244	1	0	0	0	0	1	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	g0245	1	0	1	0	0	0	BCAT2	chr19	48790064	48816029
BCCIP_chr10_125818546_125841551	0/1	g0001	35	2	7	15	6	4	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0002	32	2	7	18	3	2	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0003	31	3	4	19	0	5	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0004	25	0	0	25	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0005	20	1	12	4	1	2	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0006	10	0	0	10	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0007	10	0	0	10	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0008	10	10	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0009	10	7	3	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0010	9	0	7	2	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0011	8	1	0	2	0	5	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0012	7	0	0	7	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0013	6	0	2	4	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0014	6	0	1	2	0	3	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0015	6	0	0	6	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0016	5	0	5	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0017	5	5	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0018	5	1	0	3	0	1	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0019	4	3	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0020	4	0	1	2	1	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0021	3	0	0	3	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0022	3	3	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0023	3	0	1	0	0	2	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0024	3	2	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0025	3	3	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0026	3	0	2	0	1	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0027	3	0	2	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0028	3	0	0	3	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0029	3	0	0	0	0	3	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0030	3	0	0	3	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0031	2	0	0	1	0	1	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0032	2	0	0	2	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0033	2	2	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0034	2	0	2	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0035	2	0	0	0	0	2	BCCIP	chr10	125818546	125841551