JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACBD3_chr1_226139679_226191741	0/0	g0342	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0343	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0344	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0345	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0346	1	0	0	0	0	1	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0347	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0348	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0349	1	0	1	0	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0350	1	0	0	0	0	1	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0351	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0352	1	0	0	0	0	1	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0353	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0354	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0355	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0356	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0357	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0358	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0359	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0360	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0361	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0362	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0363	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0364	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0365	1	0	0	0	0	1	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0366	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0367	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0368	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0369	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0370	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0371	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0372	1	0	0	0	0	1	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0373	1	0	0	1	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0374	1	0	1	0	0	0	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	g0375	1	1	0	0	0	0	ACBD3	chr1	226139679	226191741
ACBD4_chr17_45130687_45149176	0/0	g0001	46	1	4	38	0	3	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0002	34	1	4	26	2	1	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0003	25	0	3	14	4	4	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0004	22	1	5	14	0	2	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0005	21	0	6	13	0	2	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0006	19	0	7	4	1	7	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0007	17	0	3	13	0	1	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0008	13	1	3	8	0	1	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0009	12	0	4	3	1	4	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0010	12	12	0	0	0	0	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	1/0	g0011	11	0	5	1	3	1	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0012	10	0	3	6	0	1	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0013	9	9	0	0	0	0	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0014	7	0	4	1	0	2	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0015	6	4	1	0	0	1	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	g0016	6	6	0	0	0	0	ACBD4	chr17	45130687	45149176