JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BCCIP_chr10_125818546_125841551	0/0	g0136	1	0	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0137	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0138	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0139	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0140	1	0	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0141	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0142	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0143	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0144	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0145	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0146	1	0	0	0	0	1	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0147	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0148	1	0	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0149	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0150	1	0	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0151	1	0	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0152	1	0	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0153	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0154	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0155	1	0	0	0	1	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0156	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0157	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0158	1	0	1	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0159	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0160	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0161	1	0	0	0	0	1	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0162	1	0	0	0	0	1	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0163	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0164	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0165	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0166	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0167	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0168	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0169	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0170	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0171	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0172	1	0	0	0	0	1	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0173	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0174	1	1	0	0	0	0	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	g0175	1	0	0	1	0	0	BCCIP	chr10	125818546	125841551
BCDIN3D_chr12_49831043_49848106	0/0	g0001	104	2	17	82	0	3	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/1	g0002	89	7	18	46	7	10	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	1/0	g0003	47	3	14	15	2	12	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	g0004	19	2	2	12	0	3	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	g0005	17	8	5	2	0	2	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	g0006	15	1	2	8	2	2	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	g0007	13	5	1	0	3	4	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	g0008	11	0	1	10	0	0	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	g0009	10	10	0	0	0	0	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	g0010	10	9	1	0	0	0	BCDIN3D	chr12	49831043	49848106