JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BCKDHB_chr6_80101671_80351270	0/0	g0285	1	0	0	0	0	1	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0286	1	0	0	0	0	1	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0287	1	0	0	1	0	0	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0288	1	0	0	1	0	0	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0289	1	0	0	1	0	0	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0290	1	0	0	1	0	0	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0291	1	0	0	1	0	0	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0292	1	0	0	1	0	0	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0293	1	0	0	1	0	0	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	g0294	1	0	0	0	1	0	BCKDHB	chr6	80101671	80351270
BCKDK_chr16_31103386_31117791	0/1	g0001	154	31	42	64	9	7	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0002	115	40	27	24	3	21	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0003	6	6	0	0	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	1/0	g0004	6	4	0	1	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0005	4	0	0	4	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0006	3	3	0	0	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0007	2	2	0	0	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0008	2	0	1	1	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0009	1	0	0	1	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0010	1	0	0	1	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0011	1	0	0	1	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0012	1	1	0	0	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0013	1	1	0	0	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0014	1	1	0	0	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0015	1	1	0	0	0	0	BCKDK	chr16	31103386	31117791
BCKDK_chr16_31103386_31117791	0/0	g0016	1	0	0	1	0	0	BCKDK	chr16	31103386	31117791
BCL10_chr1_85260776_85281632	1/0	g0001	67	12	15	33	0	6	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0002	39	2	8	20	3	6	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0003	36	14	8	3	1	10	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/1	g0004	32	0	6	16	3	6	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0005	28	2	0	24	0	2	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0006	26	0	1	19	1	5	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0007	17	0	5	10	0	2	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0008	8	0	0	8	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0009	8	3	4	0	1	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0010	7	7	0	0	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0011	7	7	0	0	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0012	6	6	0	0	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0013	6	0	0	6	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0014	5	0	0	5	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0015	4	0	4	0	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0016	4	3	1	0	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0017	4	0	3	1	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0018	4	0	0	4	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0019	4	0	0	4	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0020	3	0	0	3	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0021	3	3	0	0	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0022	3	0	0	3	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0023	3	2	1	0	0	0	BCL10	chr1	85260776	85281632
BCL10_chr1_85260776_85281632	0/0	g0024	3	0	1	0	1	1	BCL10	chr1	85260776	85281632