JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BDH1_chr3_197504783_197560968	0/0	g0294	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0295	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0296	1	0	0	0	0	1	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0297	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0298	1	0	0	0	0	1	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0299	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0300	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0301	1	0	0	0	0	1	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0302	1	0	0	0	0	1	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0303	1	1	0	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0304	1	1	0	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0305	1	1	0	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0306	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0307	1	1	0	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0308	1	1	0	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0309	1	1	0	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0310	1	1	0	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0311	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	g0312	1	0	1	0	0	0	BDH1	chr3	197504783	197560968
BDH2_chr4_103072592_103104834	1/0	g0001	58	4	9	33	3	8	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0002	18	1	8	7	2	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0003	17	3	2	12	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/1	g0004	13	0	5	6	0	1	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0005	12	0	2	9	0	1	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0006	8	0	0	7	0	1	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0007	7	1	2	0	0	4	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0008	7	7	0	0	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0009	6	0	1	5	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0010	5	0	0	5	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0011	4	0	0	4	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0012	4	0	0	4	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0013	4	3	1	0	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0014	4	3	0	1	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0015	4	0	0	4	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0016	4	0	0	4	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0017	4	3	1	0	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0018	3	0	0	1	0	2	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0019	3	3	0	0	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0020	3	0	0	3	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0021	3	3	0	0	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0022	3	0	0	2	0	1	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0023	3	0	0	0	0	3	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0024	3	0	0	3	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0025	3	3	0	0	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0026	3	3	0	0	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0027	3	0	1	2	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0028	3	0	0	3	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0029	2	0	0	2	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0030	2	0	0	2	0	0	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	g0031	2	0	0	2	0	0	BDH2	chr4	103072592	103104834