JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACBD6_chr1_180283230_180507577	0/0	g0321	1	1	0	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0322	1	1	0	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0323	1	1	0	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0324	1	0	0	1	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0325	1	0	1	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0326	1	0	1	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0327	1	0	0	0	0	1	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0328	1	0	0	1	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0329	1	0	0	1	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0330	1	1	0	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0331	1	1	0	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0332	1	1	0	0	0	0	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	g0333	1	1	0	0	0	0	ACBD6	chr1	180283230	180507577
ACBD7_chr10_15070475_15093776	0/0	g0001	60	8	8	38	1	5	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0002	29	0	7	20	0	2	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0003	16	1	8	0	0	7	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0004	16	0	0	16	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0005	10	1	0	8	0	1	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0006	10	0	5	5	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/1	g0007	7	0	3	0	2	1	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	1/0	g0008	7	0	4	1	1	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0009	5	4	1	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0010	5	0	4	0	1	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0011	5	5	0	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0012	4	4	0	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0013	4	3	1	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0014	4	1	1	0	1	1	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0015	4	0	0	4	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0016	4	1	2	1	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0017	3	0	0	3	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0018	3	0	2	0	1	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0019	3	3	0	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0020	3	2	1	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0021	3	0	0	2	0	1	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0022	3	0	0	3	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0023	3	0	1	1	0	1	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0024	3	0	0	3	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0025	3	0	0	2	1	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0026	3	0	0	2	0	1	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0027	3	0	0	3	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0028	3	3	0	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0029	2	0	0	0	2	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0030	2	0	0	2	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0031	2	0	0	0	1	1	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0032	2	1	1	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0033	2	2	0	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0034	2	2	0	0	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0035	2	0	0	2	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0036	2	0	0	2	0	0	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	g0037	2	0	0	2	0	0	ACBD7	chr10	15070475	15093776