JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BEAN1_chr16_66422295_66487833	0/0	g0270	1	0	0	0	1	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0271	1	0	1	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0272	1	0	0	1	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0273	1	0	1	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0274	1	0	1	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0275	1	1	0	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0276	1	1	0	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0277	1	0	1	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0278	1	0	0	1	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0279	1	0	0	1	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0280	1	0	0	1	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0281	1	0	0	1	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0282	1	0	0	0	1	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0283	1	1	0	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0284	1	1	0	0	0	0	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	g0285	1	1	0	0	0	0	BEAN1	chr16	66422295	66487833
BECN1_chr17_42805134_42829282	0/1	g0001	47	12	13	16	1	4	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0002	23	1	4	13	4	1	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0003	14	4	1	5	0	4	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0004	12	0	6	1	3	2	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0005	11	10	0	0	0	1	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0006	7	0	0	5	0	2	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0007	6	0	6	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0008	6	0	1	5	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0009	6	0	3	2	0	1	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0010	6	6	0	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0011	6	0	5	1	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0012	5	4	1	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0013	5	0	3	1	0	1	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0014	4	4	0	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0015	4	0	0	4	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0016	4	1	0	3	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0017	4	0	0	4	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0018	4	3	0	0	0	1	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0019	3	3	0	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0020	3	3	0	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0021	3	3	0	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0022	3	0	0	0	1	2	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0023	3	0	0	2	0	1	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0024	2	0	0	1	1	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0025	2	0	0	2	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0026	2	2	0	0	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0027	2	0	0	2	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0028	2	0	0	2	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0029	2	0	0	2	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0030	2	0	0	2	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0031	2	0	0	0	0	2	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0032	2	0	0	2	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0033	2	1	0	1	0	0	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	g0034	2	0	1	0	0	1	BECN1	chr17	42805134	42829282