JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BEND6_chr6_56950107_57032346	0/0	g0168	1	0	0	1	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0169	1	0	1	0	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0170	1	0	0	0	0	1	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0171	1	0	1	0	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0172	1	1	0	0	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0173	1	0	0	0	0	1	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0174	1	0	0	0	1	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0175	1	1	0	0	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0176	1	0	0	0	0	1	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0177	1	0	1	0	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0178	1	0	0	0	0	1	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0179	1	1	0	0	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0180	1	1	0	0	0	0	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	g0181	1	1	0	0	0	0	BEND6	chr6	56950107	57032346
BEND7_chr10_13436088_13534014	0/0	g0001	4	1	3	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0002	4	0	4	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0003	3	0	0	3	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0004	3	0	2	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0005	3	3	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0006	3	0	0	2	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0007	2	0	2	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0008	2	1	1	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0009	2	2	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0010	2	0	2	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0011	2	0	0	2	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0012	2	0	0	2	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0013	2	2	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0014	2	0	1	0	1	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0015	2	0	2	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0016	2	2	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0017	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0018	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0019	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0020	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0021	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0022	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0023	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0024	1	1	0	0	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0025	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0026	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0027	1	0	0	1	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0028	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0029	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0030	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0031	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0032	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0033	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0034	1	0	0	0	0	1	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0035	1	0	0	1	0	0	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	g0036	1	0	0	1	0	0	BEND7	chr10	13436088	13534014