JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BEST1_chr11_61945351_61969461	0/0	g0161	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0162	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0163	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0164	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0165	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0166	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0167	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0168	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0169	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0170	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0171	1	0	0	0	0	1	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0172	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0173	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0174	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0175	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0176	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0177	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0178	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0179	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0180	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0181	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0182	1	1	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0183	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0184	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0185	1	0	0	0	0	1	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0186	1	0	0	0	0	1	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0187	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0188	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0189	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0190	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0191	1	0	0	0	1	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0192	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0193	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0194	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0195	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0196	1	0	0	0	0	1	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0197	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/1	g0198	1	0	0	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0199	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0200	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0201	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0202	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0203	1	0	1	0	0	0	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	g0204	1	0	0	1	0	0	BEST1	chr11	61945351	61969461
BEST2_chr19_12746791_12763458	1/1	g0001	86	6	10	56	5	7	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	g0002	69	7	14	30	6	12	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	g0003	38	0	9	23	2	4	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	g0004	22	1	5	12	0	4	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	g0005	21	2	10	5	3	1	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	g0006	16	0	6	5	1	4	BEST2	chr19	12746791	12763458