JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BEST3_chr12_69648609_69704303	0/0	g0302	1	0	0	0	0	1	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0303	1	0	0	0	1	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0304	1	0	1	0	0	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0305	1	0	0	0	0	1	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0306	1	0	1	0	0	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0307	1	0	0	1	0	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0308	1	1	0	0	0	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0309	1	1	0	0	0	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0310	1	0	1	0	0	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0311	1	0	0	0	0	1	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0312	1	0	0	0	0	1	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0313	1	0	1	0	0	0	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	g0314	1	1	0	0	0	0	BEST3	chr12	69648609	69704303
BEST4_chr1_44778585_44793170	0/0	g0001	152	30	37	55	5	25	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/1	g0002	62	12	15	25	2	7	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0003	50	4	8	26	4	8	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0004	17	0	0	16	1	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0005	14	2	1	10	0	1	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0006	12	0	0	12	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	1/0	g0007	10	1	0	6	0	2	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0008	9	9	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0009	8	7	1	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0010	7	6	1	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0011	7	1	1	4	1	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0012	6	5	1	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0013	4	2	1	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0014	4	4	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0015	3	0	0	0	0	3	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0016	2	0	0	2	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0017	2	0	0	2	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0018	1	1	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0019	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0020	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0021	1	0	1	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0022	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0023	1	1	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0024	1	1	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0025	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0026	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0027	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0028	1	0	1	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0029	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0030	1	0	0	0	1	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0031	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0032	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0033	1	0	0	1	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0034	1	1	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0035	1	1	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0036	1	1	0	0	0	0	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	g0037	1	0	0	1	0	0	BEST4	chr1	44778585	44793170