JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BET1L_chr11_197924_212399	0/0	g0050	1	1	0	0	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0051	1	1	0	0	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0052	1	1	0	0	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0053	1	1	0	0	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0054	1	0	0	0	0	1	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0055	1	0	0	1	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0056	1	1	0	0	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0057	1	0	0	1	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0058	1	0	0	0	0	1	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0059	1	1	0	0	0	0	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	g0060	1	0	0	1	0	0	BET1L	chr11	197924	212399
BET1_chr7_93988245_94009355	1/1	g0001	97	13	23	39	6	14	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0002	54	0	0	51	0	3	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0003	53	2	22	17	5	7	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0004	19	2	0	17	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0005	17	2	4	7	0	4	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0006	14	11	3	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0007	9	9	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0008	8	0	0	8	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0009	5	0	0	5	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0010	4	0	2	0	0	2	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0011	4	0	0	4	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0012	4	0	0	4	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0013	4	4	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0014	4	1	3	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0015	3	3	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0016	3	0	1	2	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0017	3	0	0	0	0	3	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0018	3	0	0	0	0	3	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0019	3	3	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0020	3	3	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0021	2	0	0	2	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0022	2	2	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0023	2	0	0	1	0	1	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0024	2	0	0	2	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0025	2	0	0	1	0	1	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0026	2	2	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0027	2	2	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0028	2	0	0	2	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0029	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0030	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0031	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0032	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0033	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0034	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0035	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0036	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0037	1	0	0	0	1	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0038	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0039	1	0	0	1	0	0	BET1	chr7	93988245	94009355