JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BET1_chr7_93988245_94009355	0/0	g0090	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0091	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0092	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0093	1	0	1	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0094	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0095	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0096	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0097	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0098	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0099	1	0	0	1	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0100	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0101	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BET1_chr7_93988245_94009355	0/0	g0102	1	1	0	0	0	0	BET1	chr7	93988245	94009355
BEX1_chrX_103057651_103069171	0/0	g0001	57	8	17	24	6	2	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0002	37	7	5	24	1	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0003	34	6	14	8	2	4	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/1	g0004	33	2	9	16	1	4	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0005	26	1	4	16	0	5	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0006	21	0	6	15	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0007	13	0	3	7	0	3	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0008	13	2	0	9	1	1	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0009	10	9	1	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0010	10	9	1	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0011	8	7	1	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0012	8	2	1	5	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0013	7	0	0	7	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0014	7	2	0	2	0	3	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0015	6	2	0	4	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0016	5	4	1	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0017	4	4	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0018	4	0	0	4	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0019	3	0	0	3	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0020	3	0	0	3	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0021	2	0	0	2	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0022	2	2	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0023	2	2	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0024	2	2	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0025	2	2	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0026	2	0	0	1	0	1	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0027	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0028	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0029	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0030	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0031	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0032	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	1/0	g0033	1	0	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0034	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0035	1	1	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0036	1	1	0	0	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0037	1	1	0	0	0	0	BEX1	chrX	103057651	103069171